Contents (a partial summary of Baihan Lin's coding projects)

About me

• Baihan Lin (林柏翰)
• University of Washington, Seattle
• Computational Neuroscience Program
  • Department of Applied Mathematics (B.S. in ACMS)
  • Department of Physics (B.S. in Biophysics)
  • Department of Psychology (B.A. in Psychology)

Research:

• Baker Lab
  UW Biochem, Institute for Protein Design https://www.bakerlab.org/
  • (2015 Dec) bp_wc2dm (original) -Java- repo
  • (2015 Nov) bp_solver (original) -Java- repo
  • (2015 Nov) bp_creator (original) -Java- repo
  • (2015 Oct) ABEGO_solver (original) -Java / Perl- repo
  • (2015-2016) scripts (original) -Unix cmd / Python- repo
• Olavarria Lab
  UW Psych, Computational Neuroscience Program
  • (2016 Apr) IntanEphys (original) -MATLAB- repo
  • (2014 May) Patch_Processor_2.0 (original) + (ImageJ) -Java- repo
  • (2014 May) Patch_Processor_1.0 (original) -Java- repo
  • (2014 May) Analysis (original) -Java- repo
• Teng Lab
  BIME, Virology & Systems Biology
  • (2016 Apr) Ebola_GUI_SL (original) -MATLAB / R- repo
  • (2014 Aug) Matrix_solver (original) -Java- repo
  • (2014 Jul) Influenza_Model (original) -MATLAB-
  • (2014 Dec) PCA (original) -R-
• Qian Lab / Huang Lab
  UW Amath, Institute for Systems Biology
  • (2016 July) GRN (original) -R- repo
  • (2016 July) SPADE_stochastics (modify) -MATLAB- repo
• BGI
  Genomics, Human Health Application Lab http://www.genomics.cn
  • (2013 Sep) Autism_Genomics_QC_report_adapter (modify) -Perl- repo
  • (2013 Aug) Autism_Genomics_QC_NACTG_stat (original) -Perl- repo
  • (2013 Jul) scripts (original) -term cmd-
• Comp Neuro
  • (2014 Feb) Neuronal_RC_HH_Model (original) -MATLAB- repo
  • (2014 Jan) Neuron_Tuning_Curve (original) -MATLAB- repo
• Indie
  • (2016 Apr) Energy_plot (original) -MATLAB-
  • (2016 Mar) Ebola_Bat_Model (original) -MATLAB- repo
  • (2016 Mar) Rika_Model (original) -MATLAB-
  • (2016 Feb) Redo_NuRsE (modify) -MATLAB- (from jianxigao, learn the methodology) repo
  • (2016 Feb) Biochemical_Oscillation (original) -MATLAB- repo
  • (2015 Dec) Network_Analysis (original) -MATLAB / R / Cytoscape-
  • (2015 Nov) nextflu (modify) -Python- (from blab, investigate how it work) repo
• Old
  • (2014 Jun) Hoffman_Coding (original) -Java- repo
  • (2011 Jul) Hospital_Management (original) -C-

Engineering:

• 3DPrint https://github.com/doer3Dprint
  UW WOOF3D 3D printing club http://students.washington.edu/woof3d/bigblue.html
  • (2016 Mar) BigBlue3DPrinter (modify) -C- (from Marlin Firmware, modified to fit UW Big Blue) repo
  • (2016 Feb) Octoprint (modify) -JavaScript- (from fossel, modified to enable wifi printing in UW Big Blue) repo
  • (2016 Feb) Smoothieware (modify) -C++- (from Smoothieware, modified to fit UW Big Blue) repo
  • (2016 Feb) MarlinForKilo (modify) -C- (from pomeroyb, to learn which parameters to change) repo

Idea:

• Roadmap (original)
• Simplified_Social (original)
• iOS_Quick_Tracker (original)
• File_Reminder (original)

Web:

• (2016 Feb) doerlbh.github.io (http://doerlbh.github.io/) (original) -HTML / JavaScript / CSS- repo
• (2016 Feb) doerblog.github.io (http://doerblog.github.io) (modify + original) -HTML / JavaScript / CSS / PHP- repo
• (2016 Mar) doercalendar.github.io (http://doerblog.github.io) (original) -HTML- repo
• (2016 Mar) doerbeta.github.io (http://doerbeta.github.io) (original) -HTML- repo
• (2016 Feb) Web_UW (http://students.washington.edu/sunnylin/) (original) -HTML / JavaScript / CSS / PHP-
• (2016 Feb) Web_self (http://www.doerlbh.com) (original) -HTML / JavaScript / CSS / PHP -

Learn:

• GitHub - gotgithub (forked)
• R - bgiR (forked)
• Rosetta - rosetta_clone_tools (forked)
• TED - TED视频 (forked)

Life:

• ElseBand (original) FB_page Youtube
• WhateverBand
• Life-Time-Tracker (clone) (forked from zhangmhao)

Contact:

Baihan Lin
Computational Neuroscience Program
University of Washington

Emails:

• (Work) doerlbh@gmail.com,
• (Edu) sunnylin@uw.edu

Skills:

• (Proficient) Java, MATLAB
• (Familiar) Perl, C/C++, R, Unix cmd, Python
• (Learning) Mathematica, Python, HTML, JavaScript, CSS, PHP

Environment: Windows, Apple OS, Linux, BOINC, Hyak